7N9U

CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	APS BEAMLINE 24-ID-C
Synchrotron site	APS
Beamline	24-ID-C
Temperature [K]	100
Detector technology	PIXEL
Collection date	2018-10-29
Detector	DECTRIS PILATUS 6M-F
Wavelength(s)	1.0711
Spacegroup name	I 2 2 2
Unit cell lengths	129.698, 143.570, 228.940
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	49.190 - 3.190
R-factor	0.2293
Rwork	0.228
R-free	0.25780
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	PDB entries 5O2U & 3H47
RMSD bond length	0.009
RMSD bond angle	1.599
Data reduction software	DENZO
Data scaling software	HKL-2000
Phasing software	PHASER
Refinement software	PHENIX (1.19.1_4122)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	50.000	50.000	3.560
High resolution limit [Å]	3.450	9.480	3.500
Rmerge	0.110	0.050	0.822
Rmeas	0.134	0.062	1.000
Rpim	0.077	0.035	0.571
Number of reflections	39258	2004	1994
<I/σ(I)>	6.6
Completeness [%]	96.2	95.4	97.3
Redundancy	2.8	2.8	2.8
CC(1/2)		0.994	0.548

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	MICROBATCH		295	0.1 M Bis-Tris propane:HCl, pH 7.0, 1.4 M sodium malonate, pH 7.0