7N7Y
Crystal Structure of SARS-CoV-2 NendoU in complex with Z18197050
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.91256 |
Spacegroup name | P 63 |
Unit cell lengths | 150.302, 150.302, 112.623 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 65.080 - 2.090 |
R-factor | 0.2175 |
Rwork | 0.217 |
R-free | 0.24080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6x1b |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 75.280 | 75.280 | 2.153 |
High resolution limit [Å] | 2.090 | 5.744 | 2.116 |
Rmerge | 0.256 | 0.064 | 6.500 |
Rmeas | 0.270 | 0.068 | 6.831 |
Rpim | 0.084 | 0.022 | 2.092 |
Total number of observations | 43467 | 43603 | |
Number of reflections | 82719 | 4239 | 4136 |
<I/σ(I)> | 6.7 | 24.6 | 0.5 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 10.3 | 10.3 | 10.5 |
CC(1/2) | 0.997 | 0.997 | 0.223 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 0.1 M Na3 Citrate pH 5,14% w/v PEG6000 |