7N7W
Crystal Structure of SARS-CoV-2 NendoU in complex with CSC000178569
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.91256 |
Spacegroup name | P 63 |
Unit cell lengths | 150.104, 150.104, 113.206 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 85.370 - 2.420 |
R-factor | 0.1955 |
Rwork | 0.194 |
R-free | 0.22810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6x1b |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 130.029 | 130.029 | 2.193 |
High resolution limit [Å] | 2.150 | 5.851 | 2.156 |
Rmerge | 0.751 | 0.153 | 7.985 |
Rmeas | 0.790 | 0.162 | 8.393 |
Rpim | 0.245 | 0.051 | 2.576 |
Total number of observations | 41000 | 40892 | |
Number of reflections | 78302 | 3994 | 3867 |
<I/σ(I)> | 4 | 12.4 | 0.5 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 10.4 | 10.3 | 10.6 |
CC(1/2) | 0.981 | 0.997 | 0.195 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 0.1 M Na3 Citrate pH 5,14% w/v PEG6000 |