7N7I
X-ray crystal structure of Viperin-like enzyme from Trichoderma virens
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9893 |
Spacegroup name | P 31 |
Unit cell lengths | 85.943, 85.943, 111.718 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.140 - 3.190 |
R-factor | 0.228 |
Rwork | 0.226 |
R-free | 0.26010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vsl |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.140 | 28.140 | 3.410 |
High resolution limit [Å] | 3.190 | 9.020 | 3.190 |
Rmerge | 0.200 | 0.095 | 1.400 |
Rmeas | 0.409 | 0.100 | 1.180 |
Rpim | 0.129 | 0.030 | 0.473 |
Number of reflections | 15361 | 676 | 2598 |
<I/σ(I)> | 8.46 | ||
Completeness [%] | 98.8 | 97.4 | 93.9 |
Redundancy | 10.3 | 10.9 | 9.7 |
CC(1/2) | 0.982 | 0.997 | 0.616 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 0.1 M Tris-HCl, pH 8.5, 0.2 M sodium chloride, 25% (w/v) PEG 3350 |