7N6L
Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide EANQQKPLLGLFADG
Replaces: 7JMZExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-04-14 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.5418 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 37.621, 95.607, 117.614 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.850 - 2.400 |
R-factor | 0.2597 |
Rwork | 0.256 |
R-free | 0.33230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dkz |
RMSD bond length | 0.005 |
RMSD bond angle | 1.407 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.430 |
High resolution limit [Å] | 2.390 | 6.480 | 2.390 |
Rmerge | 0.166 | 0.100 | 2.182 |
Rmeas | 0.186 | 0.113 | 2.581 |
Rpim | 0.080 | 0.050 | 1.339 |
Total number of observations | 42388 | ||
Number of reflections | 8602 | 488 | 406 |
<I/σ(I)> | 8.7 | ||
Completeness [%] | 98.9 | 99.2 | 92.3 |
Redundancy | 4.9 | 4.8 | 3.2 |
CC(1/2) | 0.996 | 0.332 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 2.8 M (NH4)2SO4, 0.1 M K3PO4 |