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7N6L

Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide EANQQKPLLGLFADG

Replaces:  7JMZ
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2020-04-14
DetectorDECTRIS PILATUS3 R 200K-A
Wavelength(s)1.5418
Spacegroup nameI 2 2 2
Unit cell lengths37.621, 95.607, 117.614
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.850 - 2.400
R-factor0.2597
Rwork0.256
R-free0.33230
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1dkz
RMSD bond length0.005
RMSD bond angle1.407
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.430
High resolution limit [Å]2.3906.4802.390
Rmerge0.1660.1002.182
Rmeas0.1860.1132.581
Rpim0.0800.0501.339
Total number of observations42388
Number of reflections8602488406
<I/σ(I)>8.7
Completeness [%]98.999.292.3
Redundancy4.94.83.2
CC(1/2)0.9960.332
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72932.8 M (NH4)2SO4, 0.1 M K3PO4

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PDB entries from 2024-05-15

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