7N1M
Crystal Structure of the Class D Beta-lactamase OXA-935 from Pseudomonas aeruginosa, Orthorhombic Crystal Form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-05 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.12713 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.675, 91.377, 125.788 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.770 - 1.960 |
R-factor | 0.1889 |
Rwork | 0.187 |
R-free | 0.23110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1e3u |
RMSD bond length | 0.006 |
RMSD bond angle | 1.415 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.980 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.147 | 1.754 |
Rmeas | 0.154 | |
Rpim | 0.046 | 0.544 |
Number of reflections | 40444 | 2011 |
<I/σ(I)> | 19.4 | 1.97 |
Completeness [%] | 99.8 | 100 |
Redundancy | 11.1 | 10.9 |
CC(1/2) | 0.994 | 0.538 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.3 | 292 | Protein: 6.0 mg/ml, 0.01M Tris pH 8.3; Screen - AmSO4 (A9): 0.2M Ammonium iodide, 2.2M Ammonium sulfate; Cryo: 2M Lithium sulfate |