7MZJ
SARS-CoV-2 receptor binding domain bound to Fab WCSL 129 and Fab PDI 93
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.953732 |
Spacegroup name | P 1 |
Unit cell lengths | 39.038, 104.719, 127.272 |
Unit cell angles | 88.72, 83.68, 82.80 |
Refinement procedure
Resolution | 48.199 - 2.400 |
R-factor | 0.2244 |
Rwork | 0.222 |
R-free | 0.26820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7mzi |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.15_3459) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.199 | 48.199 | 2.540 |
High resolution limit [Å] | 2.400 | 7.130 | 2.400 |
Rmerge | 0.096 | 0.030 | 0.790 |
Rmeas | 0.113 | 0.036 | 0.930 |
Total number of observations | 278333 | ||
Number of reflections | 76559 | 2943 | 12144 |
<I/σ(I)> | 9.28 | 33.07 | 1.48 |
Completeness [%] | 98.4 | 98.9 | 97 |
Redundancy | 3.636 | 3.642 | 3.596 |
CC(1/2) | 0.997 | 0.999 | 0.649 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 293 | 23% PEG3350, 0.1 M sodium acetate pH 4.5 |