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7MZ4

Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.3
Synchrotron siteALS
Beamline5.0.3
Temperature [K]100
Detector technologyCCD
Collection date2013-11-16
DetectorADSC QUANTUM 315r
Wavelength(s)0.97648
Spacegroup nameP 1 21 1
Unit cell lengths54.706, 80.183, 54.927
Unit cell angles90.00, 108.64, 90.00
Refinement procedure
Resolution20.088 - 2.076
R-factor0.2189
Rwork0.216
R-free0.26980
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1bpx
RMSD bond length0.004
RMSD bond angle1.130
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX (1.8.4_1496)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]20.09010.0002.100
High resolution limit [Å]2.0605.5502.060
Rmerge0.0940.0420.396
Number of reflections2700714011369
<I/σ(I)>7.7
Completeness [%]100.0100100
Redundancy5.35.55.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29814 to 23% PEG3400, and 350 mM sodium acetate in 50 mM imidazole (pH 7.5)

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PDB entries from 2024-05-15

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