7MZ1
Structure of human DNA polymerase beta complexed with dzA in the template base paired with incoming non-hydrolyzable TTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-10-13 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.319, 79.839, 55.324 |
Unit cell angles | 90.00, 107.29, 90.00 |
Refinement procedure
Resolution | 19.960 - 2.175 |
R-factor | 0.204 |
Rwork | 0.201 |
R-free | 0.25890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bpy |
RMSD bond length | 0.005 |
RMSD bond angle | 1.373 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 10.000 | 2.220 |
High resolution limit [Å] | 2.175 | 5.870 | 2.180 |
Rmerge | 0.114 | 0.051 | 0.442 |
Number of reflections | 21664 | 1136 | 1048 |
<I/σ(I)> | 7 | ||
Completeness [%] | 98.7 | 100 | 94.2 |
Redundancy | 5.4 | 5.6 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 14% to 23% PEG3400, and 350 mM sodium acetate in 50 mM imidazole (pH 7.5) |