7MW8
Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL12-2 |
| Synchrotron site | SSRL |
| Beamline | BL12-2 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-10-24 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 1.18076 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 130.420, 66.719, 134.961 |
| Unit cell angles | 90.00, 116.25, 90.00 |
Refinement procedure
| Resolution | 30.040 - 1.900 |
| R-factor | 0.2458 |
| Rwork | 0.243 |
| R-free | 0.30300 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2gsu |
| RMSD bond length | 0.013 |
| RMSD bond angle | 1.679 |
| Data reduction software | XDS |
| Data scaling software | SCALA (3.3.22) |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 121.042 | 38.990 | 2.000 |
| High resolution limit [Å] | 1.900 | 6.010 | 1.900 |
| Rmerge | 0.074 | 0.596 | |
| Rmeas | 0.160 | 0.089 | 0.725 |
| Rpim | 0.089 | 0.048 | 0.407 |
| Total number of observations | 449161 | 16701 | 56237 |
| Number of reflections | 155855 | 5315 | 21238 |
| <I/σ(I)> | 3.7 | 6.7 | 1.1 |
| Completeness [%] | 95.0 | 98.3 | 89.1 |
| Redundancy | 2.9 | 3.1 | 2.6 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | PEG 3350, Bis-Tris |






