7MLE
Crystal Structure of HLA-A*03:01 in complex with VVRPSVASK, an 9-mer epitope from Influenza B virus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-08-15 |
Detector | DECTRIS PILATUS 12M |
Wavelength(s) | 0.98 |
Spacegroup name | P 6 2 2 |
Unit cell lengths | 155.265, 155.265, 85.331 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.660 - 2.200 |
R-factor | 0.219 |
Rwork | 0.216 |
R-free | 0.26400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rl1 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.100 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.820 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Number of reflections | 31267 | 2662 |
<I/σ(I)> | 16.5 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 40.3 | 40.7 |
CC(1/2) | 0.987 | 0.916 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 277 | 1M trisodium citrate, 0.1M sodium cacodylate pH 6.5 |