7MJW
Methylated MiaB in the complex with 5'-deoxyadenosine, methionine and RNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0033 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 68.900, 97.413, 80.738 |
Unit cell angles | 90.00, 108.08, 90.00 |
Refinement procedure
Resolution | 39.080 - 1.400 |
R-factor | 0.1497 |
Rwork | 0.149 |
R-free | 0.17370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2qgq |
RMSD bond length | 0.018 |
RMSD bond angle | 1.848 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.430 |
High resolution limit [Å] | 1.350 | 3.660 | 1.400 |
Rmerge | 0.064 | 0.030 | 0.882 |
Rmeas | 0.071 | 0.034 | 0.977 |
Rpim | 0.030 | 0.014 | 0.417 |
Number of reflections | 308607 | 11290 | 11074 |
<I/σ(I)> | 9.5 | ||
Completeness [%] | 99.9 | 99.7 | 99.9 |
Redundancy | 5.5 | 5.5 | 5.3 |
CC(1/2) | 0.998 | 0.716 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 100 mM sodium cacodylate pH 5.5, 13% PEG 4000, 1,2-butanediol |