7MIW
Crystal Structure of Fumarate hydratase class II from Elizabethkingia anophelis NUHP1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-11-19 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97856 |
Spacegroup name | P 1 |
Unit cell lengths | 59.760, 92.650, 98.430 |
Unit cell angles | 116.15, 107.67, 90.03 |
Refinement procedure
Resolution | 35.940 - 1.250 |
R-factor | 0.1245 |
Rwork | 0.124 |
R-free | 0.14720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdb 3tv2 chain A in three domains as per Morda |
RMSD bond length | 0.006 |
RMSD bond angle | 0.918 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX (dev_4205) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.280 |
High resolution limit [Å] | 1.250 | 5.590 | 1.250 |
Rmerge | 0.038 | 0.023 | 0.266 |
Rmeas | 0.044 | 0.027 | 0.318 |
Number of reflections | 465944 | 5340 | 33117 |
<I/σ(I)> | 20.17 | 46.35 | 4.32 |
Completeness [%] | 94.2 | 96 | 90.6 |
Redundancy | 3.876 | 3.729 | 3.33 |
CC(1/2) | 0.999 | 0.998 | 0.936 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 287 | Rigaku Reagents JCSG TOP96 screen, condition #61/F1: 20% PEG 3350, 200mM Ammonium formate: ElanA.00047.b.B1.PS38159 at 25mg/ml: tray 318833 F1: cryo: 20% EG: puck NDH4-7. |