7MH7
crystal structure of NAD kinase from Pseudomonas aeruginosa PAO1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-11 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 99.165, 99.165, 121.867 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.620 - 2.610 |
R-factor | 0.2179 |
Rwork | 0.216 |
R-free | 0.25970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2AN1.pdb |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | HKL-3000 |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.113 | 0.058 | 2.782 |
Rmeas | 0.114 | 0.059 | 2.831 |
Rpim | 0.016 | 0.009 | 0.508 |
Total number of observations | 550309 | ||
Number of reflections | 11351 | 668 | 539 |
<I/σ(I)> | 7.9 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 48.5 | 45.8 | 29.6 |
CC(1/2) | 0.999 | 0.659 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.1M di-ammonium tartrate, 10% MPD, 1.5mM NADP |