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7MG9

Concanavalin A bound to DNA glycoconjugates, Man-TTTT and Man-AAAA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2020-09-20
DetectorRAYONIX MX-300
Wavelength(s)0.979
Spacegroup nameP 21 2 21
Unit cell lengths65.979, 70.180, 124.420
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution70.180 - 2.550
R-factor0.253
Rwork0.250
R-free0.31400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5cna
RMSD bond length0.008
RMSD bond angle1.503
Data reduction softwareiMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]70.1802.690
High resolution limit [Å]2.5502.550
Rmerge0.1800.580
Number of reflections172432376
<I/σ(I)>5.9147
Completeness [%]93.186
Redundancy3.252.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5295Sitting drop comprising 1 uL of Concanavalin A (32 uM), Man-TTTT (64 uM), and Man-AAAA (64 uM) + 1 uL crystallization condition (Helix screen, condition B5: 0.1 M lithium chloride, 0.01 M manganese(II) chloride tetrahydrate, 0.05 M MES (pH 6.5), 17% w/v PEG 4000). Reservoir contained 70 uL of crystallization condition

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