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7MFV

Crystal structure of synthetic nanobody (Sb16)

Replaces:  7KGL
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-02-05
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.000
Spacegroup nameP 63 2 2
Unit cell lengths68.920, 68.920, 107.170
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution39.870 - 1.900
R-factor0.2379
Rwork0.237
R-free0.25060
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7KGL
RMSD bond length0.006
RMSD bond angle0.951
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.0001.970
High resolution limit [Å]1.9001.900
Rmerge0.0741.800
Rmeas0.077
Rpim0.022
Number of reflections123601025
<I/σ(I)>15.190.69
Completeness [%]94.585
Redundancy12.412.6
CC(1/2)0.9990.526
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP729320% PEG 4000, 0.1M MES pH 6.0, 0.2M LiSO4

219869

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