7MBL
Crystal structure of Equine Serum Albumin in complex with Cobalt (II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-01 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97929 |
Spacegroup name | P 61 |
Unit cell lengths | 93.312, 93.312, 141.510 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.700 - 2.700 |
R-factor | 0.2174 |
Rwork | 0.213 |
R-free | 0.28920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5iiu |
RMSD bond length | 0.005 |
RMSD bond angle | 1.342 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.750 |
High resolution limit [Å] | 2.700 | 7.320 | 2.700 |
Rmerge | 0.089 | 0.027 | 1.124 |
Rmeas | 0.099 | 0.031 | 1.256 |
Rpim | 0.044 | 0.014 | 0.557 |
Number of reflections | 19239 | 980 | 982 |
<I/σ(I)> | 7.1 | 1.3 | |
Completeness [%] | 99.9 | 98.7 | 100 |
Redundancy | 5 | 4.6 | 5.1 |
CC(1/2) | 0.991 | 0.998 | 0.751 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | COUNTER-DIFFUSION | 7.4 | 291 | Protein: 1 uL of 34 mg/mL ESA dissolved in 10 mM Tris (pH 7.4) and 150 mM NaCl. Precipitant: 1 uL of 0.2 M lithium sulfate, 2.0 M ammonium sulfate, 0.1 M Tris pH 7.4. 15-Well hanging drop crystallization plate (Qiagen, EasyXtal). 3.3 uL of 50 mM cobalt (II) chloride dissolved in the reservoir solution were added directly to the 2 uL crystallization drop containing crystals to reach a final cobalt concentration of 31 mM and then incubated for a few hours before harvesting. Paratone was used as a cryoprotectant |