7M6C
Crystal structure of PLA2 from snake venom of peruvian Bothrops atrox
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-20 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.45863 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 36.400, 58.360, 64.460 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.263 - 1.950 |
Rwork | 0.187 |
R-free | 0.23310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1mc2 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.846 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | SIMBAD |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.263 | 43.263 | 2.060 |
High resolution limit [Å] | 1.950 | 6.170 | 1.950 |
Rmerge | 0.068 | 0.322 | |
Rmeas | 0.126 | 0.092 | 0.403 |
Rpim | 0.062 | 0.057 | 0.193 |
Total number of observations | 41934 | 1444 | 6133 |
Number of reflections | 10474 | 378 | 1489 |
<I/σ(I)> | 5.8 | 10.5 | 2.2 |
Completeness [%] | 99.7 | 98 | 99.9 |
Redundancy | 4 | 3.8 | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 20% (v/v) 2-propanol, 20% (w/v) polyethylene Glycol 4000 and 0.1 M Sodium Citrate |