7M3K
Crystal Structure of Galactonate dehydratase from Brucella melitensis biovar Abortus 2308
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-27 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 144.950, 144.950, 167.570 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.240 - 2.300 |
R-factor | 0.1816 |
Rwork | 0.180 |
R-free | 0.20830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | MR-rosetta starting from PDB entry 5OYN |
RMSD bond length | 0.005 |
RMSD bond angle | 0.757 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MR-Rosetta |
Refinement software | PHENIX (1.19) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.360 |
High resolution limit [Å] | 2.300 | 10.290 | 2.300 |
Rmerge | 0.087 | 0.036 | 0.585 |
Rmeas | 0.090 | 0.038 | 0.604 |
Number of reflections | 46675 | 629 | 3385 |
<I/σ(I)> | 19.95 | 40.6 | 4.2 |
Completeness [%] | 99.9 | 96.9 | 100 |
Redundancy | 14.887 | 11.782 | 15.476 |
CC(1/2) | 0.999 | 0.999 | 0.954 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 287 | RigakuReagents JCSG+ screen, condition b10 200mM Magnesium chloride, 100mM sodium cacodylate pH 6.5, 20% (w/V) PEG 3350: BrabA.18180.a.B1.PS02071 at 27.12mg/ml: tray 256086 b10: cryo: direct: puck bvd7-1. |