7LYG
Zika virus RNA promoter stem-loop A with tRNA-scaffold
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-11 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.1271 |
Spacegroup name | C 2 2 2 |
Unit cell lengths | 157.073, 156.588, 72.325 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.036 - 3.804 |
R-factor | 0.2315 |
Rwork | 0.227 |
R-free | 0.27150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7lyf |
RMSD bond length | 0.003 |
RMSD bond angle | 0.678 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.890 |
High resolution limit [Å] | 3.800 | 3.800 |
Number of reflections | 6864 | 6864 |
<I/σ(I)> | 23.4 | |
Completeness [%] | 95.9 | |
Redundancy | 10.4 | |
CC(1/2) | 0.998 | 0.661 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 294 | 100 mM Tris pH 8.1, 24% (w/v) polyethylene glycol 3350, 200 mM LiSO4, and 67 mM CsCl |