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7LYG

Zika virus RNA promoter stem-loop A with tRNA-scaffold

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2018-11-11
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.1271
Spacegroup nameC 2 2 2
Unit cell lengths157.073, 156.588, 72.325
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.036 - 3.804
R-factor0.2315
Rwork0.227
R-free0.27150
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7lyf
RMSD bond length0.003
RMSD bond angle0.678
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.890
High resolution limit [Å]3.8003.800
Number of reflections68646864
<I/σ(I)>23.4
Completeness [%]95.9
Redundancy10.4
CC(1/2)0.9980.661
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION294100 mM Tris pH 8.1, 24% (w/v) polyethylene glycol 3350, 200 mM LiSO4, and 67 mM CsCl

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PDB entries from 2024-05-15

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