7LV1
Cu-bound crystal structure of the engineered cyt cb562 variant, DiCyt2, crystallized in the presence of Cu(II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER AXS MICROSTAR |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-10-15 |
Detector | APEX II CCD |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.172, 83.211, 38.570 |
Unit cell angles | 90.00, 100.83, 90.00 |
Refinement procedure
Resolution | 37.880 - 1.910 |
R-factor | 0.1954 |
Rwork | 0.191 |
R-free | 0.23710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bc5 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.842 |
Data reduction software | SAINT |
Data scaling software | SADABS |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.880 | 1.978 |
High resolution limit [Å] | 1.910 | 1.910 |
Rmerge | 0.063 | 0.214 |
Rmeas | 0.067 | 0.237 |
Rpim | 0.022 | 0.099 |
Number of reflections | 16289 | 1530 |
<I/σ(I)> | 20.9 | 5.8 |
Completeness [%] | 98.8 | 93.62 |
Redundancy | 8.07 | 5.8 |
CC(1/2) | 0.999 | 0.978 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | PEG1500 25%, CaCl2 200 mM, pH 6 MES 100 mM |