7LR5
Ni-bound crystal structure of the engineered cyt cb562 variant, DiCyt2, crystallized in the presence of Ni(II) (M1) and Cu(II) (M2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.03 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.630, 60.920, 63.160 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.320 - 1.700 |
R-factor | 0.1926 |
Rwork | 0.189 |
R-free | 0.22960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bc5 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.802 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.320 | 1.761 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.724 | 0.931 |
Rmeas | 0.734 | 0.944 |
Rpim | 0.116 | 0.156 |
Number of reflections | 23765 | 2334 |
<I/σ(I)> | 35.1 | 6.5 |
Completeness [%] | 99.5 | 99.62 |
Redundancy | 38.7 | 36.7 |
CC(1/2) | 0.878 | 0.727 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | PEG1500 25%, pH 8 EPPS 100 mM, No salt, |