7LPG
APE1 product complex with abasic ribonucleotide DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-14 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 |
Unit cell lengths | 44.118, 61.077, 73.039 |
Unit cell angles | 83.68, 78.07, 87.49 |
Refinement procedure
Resolution | 23.690 - 2.080 |
R-factor | 0.2214 |
Rwork | 0.219 |
R-free | 0.26270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dff |
RMSD bond length | 0.009 |
RMSD bond angle | 1.110 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.17.1_3660) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.140 |
High resolution limit [Å] | 2.080 | 2.080 |
Rmeas | 0.119 | |
Number of reflections | 75243 | 2151 |
<I/σ(I)> | 12.5 | |
Completeness [%] | 99.5 | 97.9 |
Redundancy | 3.6 | 3.3 |
CC(1/2) | 0.680 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 291 | 200 mM MgCl2, 100 mM Sodium Citrate (pH 5), 10-15% PEG 20,000 |