7LNU
Ternary complex of the Isopentenyl Phosphate Kinase from Candidatus methanomethylophilus alvus bound to isopentenyl monophosphate and ATP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-20 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.892, 74.503, 171.691 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.390 - 2.500 |
R-factor | 0.2324 |
Rwork | 0.229 |
R-free | 0.28680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | cma apo model |
RMSD bond length | 0.002 |
RMSD bond angle | 0.652 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.540 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmeas | 0.100 | 0.681 |
Rpim | 0.047 | 0.394 |
Number of reflections | 18714 | 815 |
<I/σ(I)> | 11.9 | 1.93 |
Completeness [%] | 91.0 | |
Redundancy | 4.2 | |
CC(1/2) | 0.991 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 275 | 0.1 M Bis-Tris, pH 5.5 28% PEG 3350 0.1 M Sodium Chloride |