Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7LNT

Ternary complex of the Isopentenyl Phosphate Kinase from Candidatus methanomethylophilus alvus bound to benzyl monophosphate and ATP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2016-09-22
DetectorDECTRIS PILATUS 200K
Wavelength(s)1.54178
Spacegroup nameP 21 21 21
Unit cell lengths40.698, 74.662, 170.686
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.450 - 2.350
R-factor0.1894
Rwork0.187
R-free0.23400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)CMA apo model
RMSD bond length0.003
RMSD bond angle0.857
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.390
High resolution limit [Å]2.3502.350
Rmeas0.1090.412
Rpim0.0480.221
Number of reflections22277999
<I/σ(I)>16.92.89
Completeness [%]98.989.5
Redundancy4.5
CC(1/2)0.874
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION2950.1 M Bis-Tris pH 5.5 15% PEG 10000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon