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7LK1

Ornithine Aminotransferase (OAT) with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148) - 1 Hour Soaking

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-23
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)1.12713
Spacegroup nameP 32 2 1
Unit cell lengths115.650, 115.650, 186.690
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution36.320 - 1.790
R-factor0.2172
Rwork0.216
R-free0.24080
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1oat
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]36.32036.3201.840
High resolution limit [Å]1.7908.0101.790
Rmerge0.0840.0352.487
Rpim0.0280.0120.833
Number of reflections13618116879979
<I/σ(I)>13.741.80.9
Completeness [%]100.098.9100
Redundancy9.699.8
CC(1/2)0.9990.9990.344
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293The holoenzyme crystals were first grown via a hanging drop vapor diffusion method. Each drop contained 2 uL of protein and 2 uL of well solution. The best crystallization condition contained 10% PEG 6000, 200 mM NaCl, 10% glycerol, 100 mM Tricine pH 7.8. Once the holoenzyme crystals reached their maximum size, 2 uL of 16 mM SS-1-148 was added to the drop with crystals. The crystals were soaked for 1 h, transferred into cryoprotective solution (well solution supplemented with 30% glycerol), and then flash-frozen in liquid nitrogen.

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PDB entries from 2025-12-10

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