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7LFE

SARS-CoV-2 Main protease immature form - F2X Entry Library E03 fragment

Replaces:  7KS5
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS SIRUS BEAMLINE MANACA
Synchrotron siteLNLS SIRUS
BeamlineMANACA
Temperature [K]100
Detector technologyPIXEL
Collection date2020-09-03
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.35502
Spacegroup nameP 21 21 21
Unit cell lengths67.783, 102.069, 102.694
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution56.570 - 2.790
R-factor0.2099
Rwork0.205
R-free0.25270
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7kfi
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]56.57056.5702.940
High resolution limit [Å]2.7908.8102.790
Rmerge0.1980.0480.971
Rmeas0.2160.0521.051
Rpim0.0840.0210.399
Total number of observations108405392317723
Number of reflections169836682621
<I/σ(I)>9.124.82.4
Completeness [%]92.199.899.7
Redundancy6.45.96.8
CC(1/2)0.9910.9990.753
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION2930.1 M MES, pH 6.7, 5% DMSO, 8% PEG4000

219869

PDB entries from 2024-05-15

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