7KYR
Crystal structure of I107E CuB myoglobin (I107E L29H F43H sperm whale myoglobin)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2014-08-23 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.075 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.016, 31.728, 71.283 |
Unit cell angles | 90.00, 102.35, 90.00 |
Refinement procedure
Resolution | 34.830 - 1.710 |
R-factor | 0.1706 |
Rwork | 0.166 |
R-free | 0.20980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fwz |
RMSD bond length | 0.004 |
RMSD bond angle | 0.772 |
Data reduction software | HKL-2000 (2.3.8) |
Data scaling software | HKL-2000 (2.3.8) |
Phasing software | PHENIX (1.8.2_1309) |
Refinement software | PHENIX (1.19rc7_4070) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.760 |
High resolution limit [Å] | 1.700 | 3.660 | 1.700 |
Rmerge | 0.073 | 0.054 | 0.635 |
Rmeas | 0.077 | 0.057 | 0.698 |
Rpim | 0.025 | 0.018 | 0.285 |
Total number of observations | 124786 | ||
Number of reflections | 16343 | 1718 | 1600 |
<I/σ(I)> | 11.5 | ||
Completeness [%] | 99.8 | 100 | 98.5 |
Redundancy | 7.6 | 10.4 | 5.8 |
CC(1/2) | 0.999 | 0.843 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.6 | 277 | 1.5-2.0 mM protein in 20 mM tris sulfate pH 8.0 buffer, mixed 1:1 with crystallization solution composed of 100 mM tris sulfate pH 8.6, 200 mM sodium acetate, and 30% w/v PEG 10000 |