7KUR

Crystal Structure of Danio rerio Histone Deacetylase 10 Y307F Mutant in Complex with N-Acetylputrescine

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	APS BEAMLINE 24-ID-C
Synchrotron site	APS
Beamline	24-ID-C
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-12-15
Detector	DECTRIS PILATUS 6M-F
Wavelength(s)	0.9791
Spacegroup name	P 31 2 1
Unit cell lengths	80.560, 80.560, 245.710
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	69.770 - 2.100
R-factor	0.192
Rwork	0.191
R-free	0.21740
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	5td7
RMSD bond length	0.007
RMSD bond angle	0.871
Data reduction software	iMOSFLM
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	PHENIX (1.14_3260)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	69.770	2.160
High resolution limit [Å]	2.100	2.100
Rmerge	0.112	1.026
Rpim	0.039	0.356
Number of reflections	55068	5481
<I/σ(I)>	11.8	2.2
Completeness [%]	100.0
Redundancy	9.1
CC(1/2)	0.998	0.684

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP		277	10 mg/mL HDAC10, 10 mM N-Acetylputrescine, 1:1000 trypsin:HDAC10, 0.100 M sodium phosphate monobasic, 0.100 M sodium phosphate dibasic, 20% PEG3350 (w/v), HDAC10 microseed