7KEM
Crystallographic structure of L,D-transpeptidase 2 from Mycobacterium tuberculosis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-15 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.458 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 117.528, 121.051, 122.699 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.660 - 1.770 |
R-factor | 0.2619 |
Rwork | 0.261 |
R-free | 0.27520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tur |
RMSD bond length | 0.008 |
RMSD bond angle | 1.451 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.660 | 1.830 |
High resolution limit [Å] | 1.770 | 1.770 |
Rmerge | 0.099 | 0.981 |
Rmeas | 0.108 | |
Number of reflections | 80670 | 8453 |
<I/σ(I)> | 15.6 | 2.2 |
Completeness [%] | 99.6 | 99.9 |
Redundancy | 12.3 | 9.9 |
CC(1/2) | 0.999 | 0.824 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 3M NaOAc |