7KBK
Ricin bound to VHH antibody V6E11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-01-11 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.54 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 58.664, 186.583, 234.584 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.672 - 2.091 |
R-factor | 0.1739 |
Rwork | 0.172 |
R-free | 0.20300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2aai |
RMSD bond length | 0.010 |
RMSD bond angle | 0.943 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.130 |
High resolution limit [Å] | 2.090 | 5.670 | 2.090 |
Rmerge | 0.079 | 0.030 | 0.520 |
Rmeas | 0.090 | 0.033 | 0.632 |
Rpim | 0.040 | 0.014 | 0.350 |
Total number of observations | 332599 | ||
Number of reflections | 74803 | 3953 | 3255 |
<I/σ(I)> | 7.9 | ||
Completeness [%] | 97.5 | 96.3 | 86.2 |
Redundancy | 4.4 | 5 | 2.8 |
CC(1/2) | 0.999 | 0.753 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 200 mM sodium chloride 100 mM CHES pH 9.5, and 1.26 M ammonium sulfate. |