7KBI
Ricin bound to VHH antibody V5E1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU R-AXIS |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-06-01 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.54 |
Spacegroup name | P 63 |
Unit cell lengths | 161.418, 161.418, 67.031 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.573 - 3.049 |
R-factor | 0.2388 |
Rwork | 0.237 |
R-free | 0.27410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2aa1 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.543 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.100 |
High resolution limit [Å] | 3.049 | 8.270 | 3.050 |
Rmerge | 0.377 | 0.072 | 2.377 |
Rmeas | 0.398 | 0.076 | 2.540 |
Rpim | 0.126 | 0.024 | 0.880 |
Number of reflections | 19234 | 1002 | 942 |
<I/σ(I)> | 2.2 | ||
Completeness [%] | 99.9 | 98.7 | 100 |
Redundancy | 9.9 | 9.5 | 8.2 |
CC(1/2) | 0.998 | 0.586 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 340 mM ammonium fluoride and 22% PEG 3,350. |