7JZK
Crystal structure of LAIR1 ectodomain (from MGD21) in complex with Plasmodium RIFIN (PF3D7_0401300) V2 domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 87.118, 95.839, 71.828 |
Unit cell angles | 90.00, 103.97, 90.00 |
Refinement procedure
Resolution | 43.170 - 2.457 |
R-factor | 0.2254 |
Rwork | 0.223 |
R-free | 0.27510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jzi |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.490 |
High resolution limit [Å] | 2.450 | 6.650 | 2.450 |
Rmerge | 0.104 | 0.060 | 0.423 |
Rmeas | 0.127 | 0.074 | 0.514 |
Rpim | 0.072 | 0.043 | 0.288 |
Total number of observations | 57799 | ||
Number of reflections | 19253 | 897 | 970 |
<I/σ(I)> | 6.7 | ||
Completeness [%] | 92.3 | 83 | 93.9 |
Redundancy | 3 | 2.6 | 2.7 |
CC(1/2) | 0.992 | 0.855 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M NaCl, 0.1 M Tris HCl pH 8.5, 20% PEG 3350 |