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7JWW

Crystal structure of human ALDH1A1 bound to compound (R)-28

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2018-03-20
DetectorADSC QUANTUM 210r
Wavelength(s)0.98
Spacegroup nameP 4 2 2
Unit cell lengths108.944, 108.944, 83.092
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.010 - 1.600
R-factor0.2366
Rwork0.235
R-free0.27260
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6dum
RMSD bond length0.011
RMSD bond angle1.323
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.01050.0001.630
High resolution limit [Å]1.6004.3401.600
Rmerge0.0890.0380.765
Rmeas0.0940.0410.813
Rpim0.0300.0140.272
Number of reflections6632435713276
<I/σ(I)>9.8
Completeness [%]99.998.8100
Redundancy9.68.88.6
CC(1/2)0.9990.748
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.4293100 mM sodium BisTris, pH 6.4, 9% PEG3350, 200 mM NaCl, and 5-10 mM YbCl3, 250 uM 5-(4-(2-hydroxyethyl)phenyl)-1-methyl-6-((1-phenylethyl)thio)-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one, 1% v/v DMSO

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