7JNE
Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide RGSQLRIASR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-01-29 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.5418 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 37.261, 95.872, 117.008 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.110 - 2.540 |
R-factor | 0.2211 |
Rwork | 0.215 |
R-free | 0.33430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dkz |
RMSD bond length | 0.008 |
RMSD bond angle | 1.566 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.600 |
High resolution limit [Å] | 2.540 | 6.940 | 2.560 |
Rmerge | 0.246 | 0.097 | 2.042 |
Rmeas | 0.269 | 0.109 | 2.272 |
Rpim | 0.108 | 0.047 | 0.975 |
Number of reflections | 7047 | 401 | 349 |
<I/σ(I)> | 4.4 | ||
Completeness [%] | 99.8 | 99.5 | 96.9 |
Redundancy | 6 | 5.1 | 5 |
CC(1/2) | 0.991 | 0.412 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 2.4 M (NH4)2SO4, 0.1 M K3PO4 |