7JM0
Crystal structure of aminoglycoside resistance enzyme ApmA, apoenzyme
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-01-14 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 68.544, 76.916, 96.572 |
Unit cell angles | 90.00, 102.12, 90.00 |
Refinement procedure
Resolution | 25.000 - 2.080 |
R-factor | 0.1894 |
Rwork | 0.188 |
R-free | 0.22230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jm1 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.526 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.15_3448) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.120 |
High resolution limit [Å] | 2.080 | 2.080 |
Rmerge | 0.109 | 0.451 |
Rpim | 0.075 | 0.297 |
Number of reflections | 58261 | 2886 |
<I/σ(I)> | 19.39 | 2.08 |
Completeness [%] | 98.7 | |
Redundancy | 3.2 | |
CC(1/2) | 0.771 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 5% 2-Propanol, 0.1 M Citric acid pH 3.5, 6% PEG 20K cryoprotectant 25% ethylene glycol |