7JL9
Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J14 immobile Holliday junction with R3 symmetry
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | H 3 |
Unit cell lengths | 112.747, 112.747, 51.059 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.246 - 3.022 |
R-factor | 0.2256 |
Rwork | 0.224 |
R-free | 0.25480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vy6 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.801 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.050 |
High resolution limit [Å] | 3.000 | 8.130 | 3.000 |
Rmerge | 0.062 | 0.048 | 0.830 |
Rmeas | 0.066 | 0.050 | 0.885 |
Rpim | 0.021 | 0.016 | 0.299 |
Number of reflections | 4615 | 235 | 174 |
<I/σ(I)> | 8.7 | ||
Completeness [%] | 97.5 | 99.2 | 76.7 |
Redundancy | 9.9 | 10.4 | 7.4 |
CC(1/2) | 1.000 | 0.999 | 0.833 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.5 mL of 0.05 M Cacodylate pH 7.0 with 20 mM MgCl2, 1.0 mM spermine, 1.0 mM CoH18N6, and 15% ethanol was added to the reservoir with 2 uL added to the drop containing 4 uL of DNA stock |