7JJ2
Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J19 immobile Holliday junction with R3 symmetry
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | H 3 |
Unit cell lengths | 111.986, 111.986, 50.992 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.134 - 3.007 |
R-factor | 0.23 |
Rwork | 0.228 |
R-free | 0.26800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6xna |
RMSD bond length | 0.004 |
RMSD bond angle | 0.657 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.050 |
High resolution limit [Å] | 3.000 | 8.130 | 3.000 |
Rmerge | 0.073 | 0.049 | 0.635 |
Rmeas | 0.077 | 0.052 | 0.673 |
Rpim | 0.024 | 0.016 | 0.217 |
Number of reflections | 4591 | 229 | 189 |
<I/σ(I)> | 8.7 | ||
Completeness [%] | 96.8 | 96.6 | 78.8 |
Redundancy | 9.7 | 10.1 | 7.8 |
CC(1/2) | 0.979 | 0.999 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.5 mL of 0.05 M Cacodylate pH 7.0 with 18 mM MgCl2, 2.25 mM spermine, 0.9 mM CoH18N6, and 4.5% MPD was added to the reservoir with 2 uL added to the drop containing 4 uL of DNA stock |