7IK3
Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the O'Brien group -- Crystal Structure of SARS-CoV-2 NSP3 Macrodomain in complex with POB0212 (Mac1-x10580)
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2025-02-24 |
| Detector | DECTRIS EIGER2 XE 9M |
| Wavelength(s) | 0.92204 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 37.317, 33.628, 60.369 |
| Unit cell angles | 90.00, 95.69, 90.00 |
Refinement procedure
| Resolution | 33.090 - 1.298 |
| R-factor | 0.1833 |
| Rwork | 0.180 |
| R-free | 0.25350 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 7tx4 |
| RMSD bond length | 0.012 |
| RMSD bond angle | 1.120 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.7) |
| Phasing software | PHASER |
| Refinement software | BUSTER (2.10.4 (23-JAN-2024)) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 33.630 | 33.630 | 1.310 |
| High resolution limit [Å] | 1.290 | 7.060 | 1.290 |
| Rmerge | 0.088 | 0.054 | 1.539 |
| Rmeas | 0.096 | 0.060 | 1.920 |
| Rpim | 0.038 | 0.025 | 1.115 |
| Total number of observations | 201635 | 1503 | 2661 |
| Number of reflections | 35712 | 259 | 981 |
| <I/σ(I)> | 6.1 | 43 | 0.1 |
| Completeness [%] | 94.1 | 99.3 | 53.7 |
| Redundancy | 5.6 | 5.8 | 2.7 |
| CC(1/2) | 0.998 | 0.995 | 0.190 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 100 mM MES, pH 6.5, 30% w/v PEG4000 |
