7IJL

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z8990523194

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ALS BEAMLINE 8.3.1
Synchrotron site	ALS
Beamline	8.3.1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2024-10-16
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.88551
Spacegroup name	P 43
Unit cell lengths	88.805, 88.805, 39.636
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	44.400 - 1.010
R-factor	0.1645
Rwork	0.164
R-free	0.18410
Structure solution method	MOLECULAR REPLACEMENT
Data reduction software	XDS (Jan 19, 2025 BUILT=20250430)
Data scaling software	Aimless (0.8.2)
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.21.2_5419)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	44.400	44.400	1.030
High resolution limit [Å]	1.010	5.530	1.010
Rmerge	0.045	0.023	3.141
Rmeas	0.049	0.025	3.482
Rpim	0.019	0.009	1.474
Total number of observations	1039526	7419	40572
Number of reflections	161507	1071	7644
<I/σ(I)>	14.4	74.7	0.5
Completeness [%]	99.8	99.9	96.3
Redundancy	6.4	6.9	5.3
CC(1/2)	1.000	1.000	0.346

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	9.5	292	100 mM CHES, 28% PEG 3000