7IJK

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z8990919048

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ALS BEAMLINE 8.3.1
Synchrotron site	ALS
Beamline	8.3.1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2024-10-16
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.88551
Spacegroup name	P 43
Unit cell lengths	88.687, 88.687, 39.397
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	44.340 - 0.980
R-factor	0.1387
Rwork	0.138
R-free	0.15310
Structure solution method	MOLECULAR REPLACEMENT
Data reduction software	XDS (Jan 19, 2025 BUILT=20250430)
Data scaling software	Aimless (0.8.2)
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.21.2_5419)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	44.340	44.340	1.000
High resolution limit [Å]	0.980	5.370	0.980
Rmerge	0.040	0.021	0.671
Rmeas	0.043	0.023	0.787
Rpim	0.017	0.009	0.398
Total number of observations	1076186	8041	29040
Number of reflections	174914	1161	8188
<I/σ(I)>	17.8	57.7	1.3
Completeness [%]	99.6	99.8	95.1
Redundancy	6.2	6.9	3.5
CC(1/2)	1.000	0.999	0.725

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	9.5	292	100 mM CHES, 28% PEG 3000