7HHW

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-0000724

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ALS BEAMLINE 8.3.1
Synchrotron site	ALS
Beamline	8.3.1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-03-09
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.88557
Spacegroup name	P 43
Unit cell lengths	88.818, 88.818, 39.557
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	44.410 - 1.030
R-factor	0.1485
Rwork	0.147
R-free	0.16820
Structure solution method	MOLECULAR REPLACEMENT
Data reduction software	XDS (Jun 30, 2023)
Data scaling software	Aimless (0.7.15)
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.21.1_5286)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	44.410	44.410	1.050
High resolution limit [Å]	1.030	5.640	1.030
Rmerge	0.053	0.029	1.147
Rmeas	0.057	0.031	1.258
Rpim	0.022	0.012	0.511
Total number of observations	983856	6878	44189
Number of reflections	152361
<I/σ(I)>	15.1	59.9	1.4
Completeness [%]	99.9	99.9	99.1
Redundancy	6.5	6.9	5.9
CC(1/2)	0.999	0.999	0.561

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	9.5	292	100 mM CHES, 28% PEG 3000