7HFK

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-0004314

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ALS BEAMLINE 8.3.1
Synchrotron site	ALS
Beamline	8.3.1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-10-07
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.88557
Spacegroup name	P 43
Unit cell lengths	88.740, 88.740, 39.315
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	44.370 - 0.990
R-factor	0.154
Rwork	0.153
R-free	0.16990
Structure solution method	MOLECULAR REPLACEMENT
Data reduction software	XDS (Jun 30, 2023)
Data scaling software	Aimless (0.7.15)
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.21.1_5286)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	44.370	44.370	1.010
High resolution limit [Å]	0.990	5.420	0.990
Rmerge	0.055	0.047	1.552
Rmeas	0.060	0.051	1.765
Rpim	0.024	0.019	0.820
Total number of observations	1075690	7660	32586
Number of reflections	169248	1128	7617
<I/σ(I)>	12.8	40.2	0.7
Completeness [%]	99.5	99.9	91
Redundancy	6.4	6.8	4.3
CC(1/2)	0.999	0.998	0.575

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	9.5	292	100 mM CHES, 28% PEG 3000