7H0E
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011153-001
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-08-06 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9212 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.372, 33.308, 121.742 |
Unit cell angles | 90.00, 95.27, 90.00 |
Refinement procedure
Resolution | 19.930 - 1.370 |
R-factor | 0.1948 |
Rwork | 0.193 |
R-free | 0.22250 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.090 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.410 | 1.390 |
High resolution limit [Å] | 1.370 | 1.370 |
Rmerge | 0.074 | 1.608 |
Rmeas | 0.081 | 1.876 |
Rpim | 0.032 | 0.938 |
Total number of observations | 392524 | 11467 |
Number of reflections | 64817 | 3020 |
<I/σ(I)> | 11.6 | 0.3 |
Completeness [%] | 99.6 | |
Redundancy | 6.1 | 3.8 |
CC(1/2) | 0.998 | 0.348 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M MES (pH 6.50) and 30 % w/v PEG 4000 |