7GZN
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008351-001
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-02 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9212 |
Spacegroup name | P 43 |
Unit cell lengths | 89.250, 89.250, 39.600 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 18.100 - 1.260 |
R-factor | 0.1837 |
Rwork | 0.182 |
R-free | 0.21290 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.150 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.540 | 1.290 |
High resolution limit [Å] | 1.260 | 1.260 |
Rmerge | 0.096 | 1.267 |
Rmeas | 0.101 | 1.659 |
Rpim | 0.030 | 1.056 |
Total number of observations | 642159 | 8749 |
Number of reflections | 81854 | 4465 |
<I/σ(I)> | 11.4 | 0.6 |
Completeness [%] | 96.7 | |
Redundancy | 7.8 | 2 |
CC(1/2) | 0.998 | 0.359 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9.5 | 293 | 100 mM CHES (pH 9.5) and 30% PEG-3000 |