7GTZ
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 89.583, 89.583, 106.257 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 77.580 - 1.600 |
R-factor | 0.2149 |
Rwork | 0.214 |
R-free | 0.24060 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 77.581 | 77.581 | 1.700 |
High resolution limit [Å] | 1.600 | 4.800 | 1.600 |
Rmerge | 0.073 | 0.063 | 1.202 |
Rmeas | 0.081 | 0.070 | 1.333 |
Total number of observations | 656217 | ||
Number of reflections | 124978 | 4681 | 20015 |
<I/σ(I)> | 10.56 | 26.29 | 1.27 |
Completeness [%] | 99.5 | 99.9 | 98.3 |
CC(1/2) | 0.996 | 0.994 | 0.514 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol |