7GGS
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with EDG-MED-0e5afe9d-1 (Mpro-x12696)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-01-14 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91267 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 112.040, 52.580, 44.580 |
| Unit cell angles | 90.00, 102.88, 90.00 |
Refinement procedure
| Resolution | 54.610 - 1.490 |
| R-factor | 0.1914 |
| Rwork | 0.190 |
| R-free | 0.22020 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.990 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | BUSTER (2.10.3 (18-SEP-2020)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 54.610 | 1.530 |
| High resolution limit [Å] | 1.490 | 1.490 |
| Rmerge | 0.101 | 1.276 |
| Rmeas | 0.121 | 1.620 |
| Rpim | 0.067 | 0.986 |
| Total number of observations | 129954 | 7584 |
| Number of reflections | 41223 | 3014 |
| <I/σ(I)> | 6.5 | 0.7 |
| Completeness [%] | 99.6 | |
| Redundancy | 3.2 | 2.5 |
| CC(1/2) | 0.996 | 0.365 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |
