7G73
Crystal Structure of rat Autotaxin in complex with 6-(4-acetylpiperazin-1-yl)-3-[[1-[(3,4-dichlorophenyl)methyl]triazol-4-yl]methyl]quinazolin-4-one, i.e. SMILES c1(ccc2c(c1)C(=O)N(C=N2)CC1=CN(N=N1)Cc1ccc(c(c1)Cl)Cl)N1CCN(CC1)C(=O)C with IC50=0.0309414 microM
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X10SA |
| Synchrotron site | SLS |
| Beamline | X10SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-07-18 |
| Detector | PSI PILATUS 6M |
| Wavelength(s) | 1.000010 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 84.221, 91.859, 120.559 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 49.020 - 1.520 |
| R-factor | 0.1687 |
| Rwork | 0.167 |
| R-free | 0.19500 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | inhouse model |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 49.020 | 49.020 | 1.560 |
| High resolution limit [Å] | 1.520 | 6.800 | 1.520 |
| Rmerge | 0.089 | 0.026 | 2.577 |
| Rmeas | 0.096 | 0.029 | 2.784 |
| Total number of observations | 955690 | ||
| Number of reflections | 142156 | 1807 | 10317 |
| <I/σ(I)> | 12.31 | 50.56 | 0.73 |
| Completeness [%] | 98.7 | 99.1 | 97.4 |
| Redundancy | 6.723 | 6.194 | 6.894 |
| CC(1/2) | 0.999 | 0.999 | 0.324 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |






