7G6Z
Crystal Structure of rat Autotaxin in complex with 2-chloro-7-[(4-fluorophenyl)methyl]-9-methylpurin-8-one
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X10SA |
| Synchrotron site | SLS |
| Beamline | X10SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-05-10 |
| Detector | PSI PILATUS 6M |
| Wavelength(s) | 1.000000 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 84.304, 92.277, 120.397 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 48.990 - 1.530 |
| R-factor | 0.2094 |
| Rwork | 0.208 |
| R-free | 0.24020 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | inhouse model |
| RMSD bond length | 0.016 |
| RMSD bond angle | 1.644 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.990 | 48.990 | 1.570 |
| High resolution limit [Å] | 1.530 | 6.840 | 1.530 |
| Rmerge | 0.113 | 0.027 | 2.403 |
| Rmeas | 0.123 | 0.030 | 2.617 |
| Total number of observations | 924298 | ||
| Number of reflections | 141669 | 1776 | 10340 |
| <I/σ(I)> | 11.8 | 44.92 | 0.94 |
| Completeness [%] | 99.9 | 99.3 | 99.8 |
| Redundancy | 6.524 | 6.311 | 6.457 |
| CC(1/2) | 0.998 | 0.999 | 0.396 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |






