7G6T
Crystal Structure of rat Autotaxin in complex with 2,4-dichloro-N-phenyl-5-piperidin-1-ylsulfonylbenzamide, i.e. SMILES S(=O)(=O)(c1cc(C(=O)Nc2ccccc2)c(cc1Cl)Cl)N1CCCCC1 with IC50=3.54684 microM
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X10SA |
| Synchrotron site | SLS |
| Beamline | X10SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-02-11 |
| Detector | PSI PILATUS 6M |
| Wavelength(s) | 0.999970 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 84.020, 91.656, 119.628 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 48.730 - 2.010 |
| R-factor | 0.1945 |
| Rwork | 0.192 |
| R-free | 0.23890 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | inhouse model |
| RMSD bond length | 0.012 |
| RMSD bond angle | 1.486 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.730 | 48.730 | 2.060 |
| High resolution limit [Å] | 2.010 | 8.990 | 2.010 |
| Rmerge | 0.120 | 0.029 | 2.050 |
| Rmeas | 0.131 | 0.032 | 2.221 |
| Total number of observations | 411245 | ||
| Number of reflections | 62175 | 798 | 4535 |
| <I/σ(I)> | 12.16 | 43.53 | 1.11 |
| Completeness [%] | 99.9 | 98.4 | 99.9 |
| Redundancy | 6.614 | 5.62 | 6.769 |
| CC(1/2) | 0.998 | 0.998 | 0.374 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |






